STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
goaG14-aminobutyrate aminotransferase; Also similar to BAV2548, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (428 aa)    
Predicted Functional Partners:
amaB
N-carbamoyl-L-amino acid hydrolase.
   
 0.962
BAV2206
Gamma-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.926
gadA2
Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family.
  
 0.925
BAV0042
Putative aldehyde dehydrogenase.
  
 0.921
mmsA
Putative methylmalonate-semialdehyde dehydrogenase [acylating].
  
 0.921
gabD
Succinate-semialdehyde dehydrogenase [NADP+].
  
 0.921
BAV1141
Methylmalonate-semialdehyde dehydrogenase.
  
 0.921
mmsA-2
Methylmalonate-semialdehyde dehydrogenase [acylating].
  
 0.921
gabD-2
Succinate-semialdehyde dehydrogenase [NADP+]; Belongs to the aldehyde dehydrogenase family.
  
 0.921
BAV0504
Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.919
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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