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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aphA1Acetylpolyamine aminohydrolase; Also similar to BAV2226 (42.857 38d.). (354 aa)    
Predicted Functional Partners:
BAV2200
Conserved hypothetical protein.
 
    0.773
amaB
N-carbamoyl-L-amino acid hydrolase.
  
    0.739
BAV2203
Putative membrane protein.
   
   0.738
goaG1
4-aminobutyrate aminotransferase; Also similar to BAV2548, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   0.733
aldH
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.732
BAV2198
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
   
   0.674
BAV2196
ABC transporter permease protein.
       0.646
BAV2197
ABC transporter permease protein.
       0.646
BAV3390
Conserved hypothetical protein.
  
 0.644
BAV1835
Putative lipoprotein.
    
 0.606
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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