STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2206Gamma-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (457 aa)    
Predicted Functional Partners:
goaG2
4-aminobutyrate aminotransferase; Also similar to BAV2199, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
0.925
goaG1
4-aminobutyrate aminotransferase; Also similar to BAV2548, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
0.924
BAV0042
Putative aldehyde dehydrogenase.
    
 0.901
gabD
Succinate-semialdehyde dehydrogenase [NADP+].
    
 0.901
gabD-2
Succinate-semialdehyde dehydrogenase [NADP+]; Belongs to the aldehyde dehydrogenase family.
    
 0.901
gadA2
Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family.
    
 0.900
bioCD
Bifunctional biotin synthesis protein BioCD; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway (By similarity); In the C-terminal section; belongs to the dethiobiotin synthetase family.
 
  
 0.862
BAV0461
Putative phosphotransferase.
 
      0.707
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.660
BAV2205
Putative 2-hydroxyacid dehydrogenase; Start codon not provided.
 
   
 0.650
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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