STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctDTwo component response regulator for C4-dicarboxylate transport. (463 aa)    
Predicted Functional Partners:
dctB
Two component sensor kinase for C4-dicarboxylate transport; Start codon not provided.
 0.995
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.803
wlbJK
Putative membrane protein.
  
 
 0.732
bvgS
Virulence sensor protein; Start codon not provided.
  
 
 0.641
glnL
Nitrogen regulation protein NR(II).
 
 
 0.626
cheA-2
Chemotaxis two-cpmponent sensor kinase.
  
 
 0.590
fliM
Flagellar motor switch protein.
  
  
 0.572
BAV0230
Two-component system sensor kinase.
 
 
 0.501
dctA
Aerobic c4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
     
 0.489
glnA
Glutamine synthetase.
  
  
 0.470
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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