BAV2223 protein (Bordetella avium) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

BAV2223

Conserved hypothetical protein (pseudogene). (245 aa)

Predicted Functional Partners:

BAV2224

0.555

pnp

0.538

gltB

0.531

cheC1

0.456

rpsO

0.434

ybeY

0.429

BAV1624

0.427

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV1624	BAV2223	BAV1624	BAV2223	Putative acetyltransferase.	Conserved hypothetical protein (pseudogene).	0.427
BAV2223	BAV1624	BAV2223	BAV1624	Conserved hypothetical protein (pseudogene).	Putative acetyltransferase.	0.427
BAV2223	BAV2224	BAV2223	BAV2224	Conserved hypothetical protein (pseudogene).	Conserved hypothetical protein.	0.555
BAV2223	cheC1	BAV2223	BAV1710	Conserved hypothetical protein (pseudogene).	Flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.456
BAV2223	gltB	BAV2223	BAV3291	Conserved hypothetical protein (pseudogene).	Glutamate synthase [NADPH] large chain precursor.	0.531
BAV2223	pnp	BAV2223	BAV2667	Conserved hypothetical protein (pseudogene).	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.538
BAV2223	rpsO	BAV2223	BAV2668	Conserved hypothetical protein (pseudogene).	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.434
BAV2223	ybeY	BAV2223	BAV0837	Conserved hypothetical protein (pseudogene).	Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.429
BAV2224	BAV2223	BAV2224	BAV2223	Conserved hypothetical protein.	Conserved hypothetical protein (pseudogene).	0.555
BAV2224	rpsO	BAV2224	BAV2668	Conserved hypothetical protein.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.802
cheC1	BAV2223	BAV1710	BAV2223	Flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	Conserved hypothetical protein (pseudogene).	0.456
gltB	BAV2223	BAV3291	BAV2223	Glutamate synthase [NADPH] large chain precursor.	Conserved hypothetical protein (pseudogene).	0.531
pnp	BAV2223	BAV2667	BAV2223	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Conserved hypothetical protein (pseudogene).	0.538
pnp	rpsO	BAV2667	BAV2668	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.858
pnp	ybeY	BAV2667	BAV0837	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.430
rpsO	BAV2223	BAV2668	BAV2223	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	Conserved hypothetical protein (pseudogene).	0.434
rpsO	BAV2224	BAV2668	BAV2224	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	Conserved hypothetical protein.	0.802
rpsO	pnp	BAV2668	BAV2667	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.858
ybeY	BAV2223	BAV0837	BAV2223	Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	Conserved hypothetical protein (pseudogene).	0.429
ybeY	pnp	BAV0837	BAV2667	Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.430