STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aphA2Acetylpolyamine aminohydrolase; Also similar to BAV2201 (42.857 38d.). (339 aa)    
Predicted Functional Partners:
BAV2225
Putative transporter.
       0.727
BAV3390
Conserved hypothetical protein.
  
 0.644
BAV2224
Conserved hypothetical protein.
   
 0.619
BAV1835
Putative lipoprotein.
    
 0.606
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
    
 0.506
BAV2227
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.486
BAV2205
Putative 2-hydroxyacid dehydrogenase; Start codon not provided.
 
 
 0.460
cheR
Similar to N-terminal region of Escherichia coli chemotaxis protein methyltransferase cheR SWALL:CHER_ECOLI (SWALL:P07364) (286 aa) fasta scores: E(): 1.8e-11, 33.46 id in 257 aa.
  
 
 0.411
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.