Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAV1814 | msbA | BAV1814 | BAV2229 | ABC transporter ATP-binding protein. | Lipid A export ABC transporter,ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.461 |
| BAV1814 | wlbJK | BAV1814 | BAV0091 | ABC transporter ATP-binding protein. | Putative membrane protein. | 0.777 |
| BAV2231 | BAV2232 | BAV2231 | BAV2232 | Putative membrane protein. | Putative exported protein. | 0.796 |
| BAV2231 | msbA | BAV2231 | BAV2229 | Putative membrane protein. | Lipid A export ABC transporter,ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.665 |
| BAV2231 | waaF | BAV2231 | BAV2230 | Putative membrane protein. | ADP-heptose--LPS heptosyltransferase II. | 0.885 |
| BAV2232 | BAV2231 | BAV2232 | BAV2231 | Putative exported protein. | Putative membrane protein. | 0.796 |
| BAV2232 | msbA | BAV2232 | BAV2229 | Putative exported protein. | Lipid A export ABC transporter,ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.646 |
| BAV2232 | waaF | BAV2232 | BAV2230 | Putative exported protein. | ADP-heptose--LPS heptosyltransferase II. | 0.757 |
| dnaK | msbA | BAV2716 | BAV2229 | Chaperone protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Lipid A export ABC transporter,ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.641 |
| dnaK | pgk | BAV2716 | BAV0865 | Chaperone protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.403 |
| dnaK | thrS | BAV2716 | BAV1393 | Chaperone protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr). | 0.618 |
| dnaK | wlbJK | BAV2716 | BAV0091 | Chaperone protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Putative membrane protein. | 0.603 |
| hscA | msbA | BAV1512 | BAV2229 | Chaperone protein; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | Lipid A export ABC transporter,ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.512 |
| hscA | thrS | BAV1512 | BAV1393 | Chaperone protein; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr). | 0.464 |
| hscA | wlbJK | BAV1512 | BAV0091 | Chaperone protein; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | Putative membrane protein. | 0.603 |
| lysS | msbA | BAV1517 | BAV2229 | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Lipid A export ABC transporter,ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.435 |
| lysS | pgk | BAV1517 | BAV0865 | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.570 |
| lysS | thrS | BAV1517 | BAV1393 | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr). | 0.607 |
| msbA | BAV1814 | BAV2229 | BAV1814 | Lipid A export ABC transporter,ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | ABC transporter ATP-binding protein. | 0.461 |
| msbA | BAV2231 | BAV2229 | BAV2231 | Lipid A export ABC transporter,ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | Putative membrane protein. | 0.665 |
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