STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
waaGLipopolysaccharide core biosynthesis glycosyl protein; Also similar to BAV2238 (27.027 38d.). (368 aa)    
Predicted Functional Partners:
waaF
ADP-heptose--LPS heptosyltransferase II.
 
 
 0.977
waaC
Lipopolysaccharide heptosyltransferase-1.
 
 
 0.971
waaA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.959
BAV2235
Lipopolysaccharide core biosynthesis glycosyl transferase; Start codon not provided.
 
   
 0.935
BAV2018
Putative glycosyl transferase.
  
 
 0.916
BAV0122
Putative O-antigen polymerase.
  
 
 0.915
BAV2238
Lipopolysaccharide core biosynthesis glycosyl transferase; Also similar to BAV2233 (27.027 38d.).
 
   
0.870
BAV2234
Putative lipopolysaccharide core oligosaccharide biosynthesis protein polysaccharide deacetylase.
 
  
 0.848
BAV2237
Putative lipopolysaccharide core oligosaccharide biosynthesis protein.
 
  
 0.846
waaE
Lipopolysaccharide core biosynthesis glycosyl transferase.
  
 
 0.838
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.