STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2234Putative lipopolysaccharide core oligosaccharide biosynthesis protein polysaccharide deacetylase. (241 aa)    
Predicted Functional Partners:
waaG
Lipopolysaccharide core biosynthesis glycosyl protein; Also similar to BAV2238 (27.027 38d.).
 
  
 0.848
BAV2238
Lipopolysaccharide core biosynthesis glycosyl transferase; Also similar to BAV2233 (27.027 38d.).
 
  
 0.817
BAV2237
Putative lipopolysaccharide core oligosaccharide biosynthesis protein.
 
    
0.815
BAV2235
Lipopolysaccharide core biosynthesis glycosyl transferase; Start codon not provided.
 
  
 0.785
waaE
Lipopolysaccharide core biosynthesis glycosyl transferase.
  
  
 0.758
dnaE
DNA polymerase III alpha subunit; Similar to BAV2029 (30.755 38d.).
       0.740
BAV2646
Putative capsular polysaccharide biosynthesis glycosyl transferase.
 
  
 0.584
wssC2
Cyclic di-GMP binding protein (cellulose synthase regulatory subunit); Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
  
 0.505
wssB
Cellulose synthase catalytic subunit [UDP-forming].
  
  
 0.505
BAV2240
Putative aspartyl/asparaginyl beta-hydroxylase.
       0.477
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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