STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
waaELipopolysaccharide core biosynthesis glycosyl transferase. (252 aa)    
Predicted Functional Partners:
BAV2237
Putative lipopolysaccharide core oligosaccharide biosynthesis protein.
 
  
 0.923
BAV2238
Lipopolysaccharide core biosynthesis glycosyl transferase; Also similar to BAV2233 (27.027 38d.).
 
 
 0.914
BAV2235
Lipopolysaccharide core biosynthesis glycosyl transferase; Start codon not provided.
  
 
 0.881
dnaE
DNA polymerase III alpha subunit; Similar to BAV2029 (30.755 38d.).
       0.839
waaG
Lipopolysaccharide core biosynthesis glycosyl protein; Also similar to BAV2238 (27.027 38d.).
  
 
 0.838
BAV2234
Putative lipopolysaccharide core oligosaccharide biosynthesis protein polysaccharide deacetylase.
  
  
 0.758
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
   
 0.628
hldD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
 
 0.590
BAV3272
Putative lipopolysaccharide core biosynthesis glycosyl transferase.
 
 
 0.539
BAV2240
Putative aspartyl/asparaginyl beta-hydroxylase.
       0.529
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.