STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2240Putative aspartyl/asparaginyl beta-hydroxylase. (299 aa)    
Predicted Functional Partners:
pagP
Lipid A palmitoyl transferase; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
     
 0.937
BAV0917
Putative beta-hydroxylase.
  
  
 
0.903
BAV0468
Putative membrane-associated sulfatase.
     
 0.902
BAV2235
Lipopolysaccharide core biosynthesis glycosyl transferase; Start codon not provided.
       0.529
waaE
Lipopolysaccharide core biosynthesis glycosyl transferase.
       0.529
BAV2237
Putative lipopolysaccharide core oligosaccharide biosynthesis protein.
       0.529
BAV2238
Lipopolysaccharide core biosynthesis glycosyl transferase; Also similar to BAV2233 (27.027 38d.).
       0.529
dnaE
DNA polymerase III alpha subunit; Similar to BAV2029 (30.755 38d.).
       0.529
BAV1835
Putative lipoprotein.
  
     0.513
lpfC
Putative fimbrial usher; Start codon not provided.
  
    0.482
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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