STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2240Putative aspartyl/asparaginyl beta-hydroxylase. (299 aa)    
Predicted Functional Partners:
pagP
Lipid A palmitoyl transferase; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
     
 0.950
BAV0468
Putative membrane-associated sulfatase.
     
 0.903
BAV0917
Putative beta-hydroxylase.
  
  
 
0.903
BAV1105
Putative outer membrane protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
      
 0.530
lpxA
acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
      
 0.530
BAV2235
Lipopolysaccharide core biosynthesis glycosyl transferase; Start codon not provided.
       0.529
waaE
Lipopolysaccharide core biosynthesis glycosyl transferase.
       0.529
BAV2237
Putative lipopolysaccharide core oligosaccharide biosynthesis protein.
       0.529
BAV2238
Lipopolysaccharide core biosynthesis glycosyl transferase; Also similar to BAV2233 (27.027 38d.).
       0.529
dnaE
DNA polymerase III alpha subunit; Similar to BAV2029 (30.755 38d.).
       0.529
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.