BAV2248 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV2248

Conserved hypothetical protein. (229 aa)

Predicted Functional Partners:

BAV1825

0.877

htpG

0.822

BAV2171

0.814

dltD

0.772

BAV2363

0.753

BAV0691

0.725

BAV1826

0.724

BAV2827

0.708

ppiB

0.703

BAV3287

0.699

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0691	BAV1826	BAV0691	BAV1826	Putative membrane protein.	Putative membrane protein; No significant similarity outside the bordetellae.	0.676
BAV0691	BAV2171	BAV0691	BAV2171	Putative membrane protein.	Conserved hypothetical protein; Start codon not provided.	0.744
BAV0691	BAV2248	BAV0691	BAV2248	Putative membrane protein.	Conserved hypothetical protein.	0.725
BAV0691	BAV2363	BAV0691	BAV2363	Putative membrane protein.	Type IV pilus assembly protein.	0.734
BAV0691	BAV2827	BAV0691	BAV2827	Putative membrane protein.	Multidrug resistance protein; Start codon not provided.	0.519
BAV0691	BAV3287	BAV0691	BAV3287	Putative membrane protein.	Putative membrane protein; Start codon not provided.	0.563
BAV0691	dltD	BAV0691	BAV2990	Putative membrane protein.	Putative D-alanine transferase.	0.760
BAV1825	BAV1826	BAV1825	BAV1826	Conserved hypothetical protein.	Putative membrane protein; No significant similarity outside the bordetellae.	0.479
BAV1825	BAV2248	BAV1825	BAV2248	Conserved hypothetical protein.	Conserved hypothetical protein.	0.877
BAV1825	htpG	BAV1825	BAV0447	Conserved hypothetical protein.	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.	0.873
BAV1826	BAV0691	BAV1826	BAV0691	Putative membrane protein; No significant similarity outside the bordetellae.	Putative membrane protein.	0.676
BAV1826	BAV1825	BAV1826	BAV1825	Putative membrane protein; No significant similarity outside the bordetellae.	Conserved hypothetical protein.	0.479
BAV1826	BAV2171	BAV1826	BAV2171	Putative membrane protein; No significant similarity outside the bordetellae.	Conserved hypothetical protein; Start codon not provided.	0.761
BAV1826	BAV2248	BAV1826	BAV2248	Putative membrane protein; No significant similarity outside the bordetellae.	Conserved hypothetical protein.	0.724
BAV1826	BAV2363	BAV1826	BAV2363	Putative membrane protein; No significant similarity outside the bordetellae.	Type IV pilus assembly protein.	0.764
BAV1826	BAV2827	BAV1826	BAV2827	Putative membrane protein; No significant similarity outside the bordetellae.	Multidrug resistance protein; Start codon not provided.	0.623
BAV1826	BAV3287	BAV1826	BAV3287	Putative membrane protein; No significant similarity outside the bordetellae.	Putative membrane protein; Start codon not provided.	0.545
BAV1826	dltD	BAV1826	BAV2990	Putative membrane protein; No significant similarity outside the bordetellae.	Putative D-alanine transferase.	0.767
BAV2171	BAV0691	BAV2171	BAV0691	Conserved hypothetical protein; Start codon not provided.	Putative membrane protein.	0.744
BAV2171	BAV1826	BAV2171	BAV1826	Conserved hypothetical protein; Start codon not provided.	Putative membrane protein; No significant similarity outside the bordetellae.	0.761