STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fmdAFormamidase. (409 aa)    
Predicted Functional Partners:
fmdB
Conserved hypothetical protein.
 
     0.952
kynB
Putative cyclase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
  
  
  0.912
fdsA
NAD-dependent formate dehydrogenase alpha subunit.
     
 0.904
fdsG
NAD-dependent formate dehydrogenase gamma subunit.
     
 0.903
fdnG
Formate dehydrogenase, major subunit; The active-site selenocysteine, residue 197, is encoded by an opal stop codon.
     
 0.903
gdhA
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.902
gdhA-2
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.902
hutG
Putative N-formylglutamate amidohydrolase.
     
  0.900
fdsD
NAD-dependent formate dehydrogenase delta subunit.
     
  0.900
fdsB
NAD-dependent formate dehydrogenase beta subunit.
     
  0.900
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (16%) [HD]