Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV2284Putative pilus assembly protein. (282 aa)    
Predicted Functional Partners:
BAV2283
Putative pilus assembly protein.
 
 
 0.999
BAV2285
Putative pilus assembly protein.
 
 
 0.998
BAV2287
Putative pilus assembly protein.
 
 
 0.998
BAV2286
Putative pilus assembly protein; Belongs to the bacterial secretin family.
 
 
 0.994
BAV2531
Putative type IV pilus assembly protein (pseudogene); Unassigned protein domain.
 
 
 0.993
BAV2527
Partial CDS. Similar to the Bordetellae putative lipoprotein BB1831/BPP2381/BP2001.
 
 
 0.960
BAV2528
Putative type IV pilus assembly protein.
  
  
 
0.928
BAV2290
Putative pilus assembly protein; No significant database matches.
 
  
 0.927
BAV2291
Putative type IV pilin.
 
     0.919
BAV2532
Putative type IV pilus assembly protein (partial); Belongs to the bacterial secretin family.
 
  
 0.814
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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