STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metRLysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
metE-2
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
 
  
 0.796
BAV1035
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.531
macA
Putative macrolide-specific efflux protein (pseudogene); Belongs to the LysR transcriptional regulatory family.
  
     0.515
BAV2663
Conserved hypothetical protein.
  
     0.501
BAV0675
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.491
BAV0287
LysR-family transcriptional regulator; Start codon not provided; Belongs to the LysR transcriptional regulatory family.
  
     0.483
BAV0922
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.475
BAV2806
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.446
BAV1781
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.438
BAV1652
LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.433
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.