BAV2351 protein (Bordetella avium) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

BAV2351

Hypothetical protein; No significant database matches. (39 aa)

Predicted Functional Partners:

rpsP

0.773

BAV2353

0.547

trmD

0.444

rimM

0.444

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV2351	BAV2353	BAV2351	BAV2353	Hypothetical protein; No significant database matches.	Hypothetical protein; No significant database matches.	0.547
BAV2351	rimM	BAV2351	BAV2350	Hypothetical protein; No significant database matches.	16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.444
BAV2351	rpsP	BAV2351	BAV2352	Hypothetical protein; No significant database matches.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.773
BAV2351	trmD	BAV2351	BAV2349	Hypothetical protein; No significant database matches.	tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.444
BAV2353	BAV2351	BAV2353	BAV2351	Hypothetical protein; No significant database matches.	Hypothetical protein; No significant database matches.	0.547
BAV2353	rpsP	BAV2353	BAV2352	Hypothetical protein; No significant database matches.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.547
rimM	BAV2351	BAV2350	BAV2351	16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	Hypothetical protein; No significant database matches.	0.444
rimM	rpsP	BAV2350	BAV2352	16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.983
rimM	trmD	BAV2350	BAV2349	16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.993
rpsP	BAV2351	BAV2352	BAV2351	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	Hypothetical protein; No significant database matches.	0.773
rpsP	BAV2353	BAV2352	BAV2353	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	Hypothetical protein; No significant database matches.	0.547
rpsP	rimM	BAV2352	BAV2350	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.983
rpsP	trmD	BAV2352	BAV2349	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.987
trmD	BAV2351	BAV2349	BAV2351	tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	Hypothetical protein; No significant database matches.	0.444
trmD	rimM	BAV2349	BAV2350	tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.993
trmD	rpsP	BAV2349	BAV2352	tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.987