STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2360Type IV pilus assembly protein. (504 aa)    
Predicted Functional Partners:
gspF
General secretion pathway protein F.
 
 
 0.969
BAV2359
Type IV pilus assembly protein.
  
 
 0.953
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 
0.929
gspG
General secretion pathway protein G; Start codon not provided.
 
 
 0.908
BAV2357
Putative type IV pilus-associated protein; Start codon not provided.
  
 
 0.902
BAV2358
Putative type IV pilin subunit.
  
 
 0.902
BAV2363
Type IV pilus assembly protein.
  
  
 0.806
BAV2364
Type IV pilus assembly protein.
       0.776
BAV2361
Putative type IV pilus assembly protein; No significant database matches. Seems to be unique to the Bordetellae.
       0.773
BAV2362
Putative type IV pilus assembly protein; No significant database matches. Seems to be unique to the Bordetellae.
       0.773
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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