STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2363Type IV pilus assembly protein. (520 aa)    
Predicted Functional Partners:
BAV2359
Type IV pilus assembly protein.
  
  
 0.867
BAV2362
Putative type IV pilus assembly protein; No significant database matches. Seems to be unique to the Bordetellae.
       0.854
BAV2357
Putative type IV pilus-associated protein; Start codon not provided.
  
  
 0.818
BAV2360
Type IV pilus assembly protein.
  
  
 0.806
BAV2364
Type IV pilus assembly protein.
       0.804
BAV2358
Putative type IV pilin subunit.
  
  
 0.793
BAV2361
Putative type IV pilus assembly protein; No significant database matches. Seems to be unique to the Bordetellae.
       0.780
dltD
Putative D-alanine transferase.
  
     0.772
BAV2171
Conserved hypothetical protein; Start codon not provided.
  
     0.771
BAV1826
Putative membrane protein; No significant similarity outside the bordetellae.
 
  
 0.763
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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