STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2364Type IV pilus assembly protein. (264 aa)    
Predicted Functional Partners:
BAV2359
Type IV pilus assembly protein.
       0.811
BAV2362
Putative type IV pilus assembly protein; No significant database matches. Seems to be unique to the Bordetellae.
       0.811
BAV2363
Type IV pilus assembly protein.
       0.804
BAV2358
Putative type IV pilin subunit.
       0.792
BAV2361
Putative type IV pilus assembly protein; No significant database matches. Seems to be unique to the Bordetellae.
       0.780
BAV2360
Type IV pilus assembly protein.
       0.776
BAV2357
Putative type IV pilus-associated protein; Start codon not provided.
       0.773
nhaA
Na+/H+ antiporter protein; Start codon not provided.
   
    0.702
BAV2355
Conserved hypothetical protein; Belongs to the sulfur carrier protein TusA family.
       0.561
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.561
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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