STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
dadA4D-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. (418 aa)    
Predicted Functional Partners:
bllY
4-hydroxyphenylpyruvate dioxygenase (putative hemolysin).
   
 
 0.910
dat
D-alanine aminotransferase.
     
 0.902
tyrB
Aromatic-amino-acid aminotransferase.
     
 0.902
hisC1
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
hisC2
Histidinol-phosphate aminotransferase; Also weakly similar to BAV3315 (28.369 38d.); Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
hisC3
Histidinol-phosphate aminotransferase; Also weakly similar to BAV2339 (28.369 38d.); Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
BAV2365
Putative glycerol-3-phosphate-binding periplasmic protein.
  
    0.794
dadX
Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.550
BAV2367
Probable hydroxylase.
     
 0.469
BAV1582
Putative dioxygenase system, reductase component.
   
 
 0.457
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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