STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panDAspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (122 aa)    
Predicted Functional Partners:
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
 0.999
BAV0504
Omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.910
goaG1
4-aminobutyrate aminotransferase; Also similar to BAV2548, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.906
goaG2
4-aminobutyrate aminotransferase; Also similar to BAV2199, (67.952 38d.); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.906
gadA2
Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family.
     
 0.906
ansB
L-asparaginase II; Belongs to the asparaginase 1 family.
     
 0.872
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.812
wbpS
Putative O-antigen biosynthesis aminotransferase.
     
  0.800
BAV1157
L-asparaginase.
     
  0.800
BAV1890
Aspartate racemase.
     
  0.800
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.