STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioHPutative biotin biosynthesis protein. (212 aa)    
Predicted Functional Partners:
bioF
8-amino-7-oxononanoate synthase.
 
 0.991
bioCD
Bifunctional biotin synthesis protein BioCD; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway (By similarity); In the C-terminal section; belongs to the dethiobiotin synthetase family.
 
  
 0.946
fabI
Enoyl-[acyl-carrier-protein] reductase [NADH].
     
 0.902
fabI-2
Enoyl-[acyl-carrier-protein] reductase [NADH].
     
 0.902
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.747
BAV3379
Putative membrane protein.
  
    0.487
BAV3283
Putative sodium/hydrogen antiporter.
  
     0.470
BAV0388
Hypothetical protein.
  
     0.457
ohrR
MarR-family transcriptional regulator.
       0.419
apaH
Diadenosine-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.405
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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