STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bph2DNA-binding protein; Start codon not provided; Belongs to the bacterial histone-like protein family. (105 aa)    
Predicted Functional Partners:
BAV0751
Putative membrane protein.
  
     0.701
BAV0749
Conserved hypothetical protein; Start codon not provided.
  
     0.689
BAV0752
Conserved hypothetical protein.
  
     0.670
ihfA
Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
  
 
 0.582
bph3
DNA-binding protein (histone).
  
   0.540
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
   
  
 0.537
BAV0750
Probable outer membrane protein.
  
     0.525
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.519
pheA
P-protein [includes: chorismate mutase and prephenate dehydratase].
     
 0.518
BAV2490
MarR-family transcriptional regulator.
  
    0.502
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.