STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV2525Probable sigma-54 interacting transcription regulator (partial); Partial CDS. Similar to an internal region of the Bordetellae putative response regulators BB1834/BPP2384/BP2004. (103 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.802
wlbJK
Putative membrane protein.
  
 
 0.732
bvgS
Virulence sensor protein; Start codon not provided.
  
 
 0.641
BAV2524
Putative exported protein.
  
    0.621
BAV2525A
Putative exported protein (partial); Partial CDS. Similar to the N-terminal region of the Bordetellae putative exported protein BB1833/BPP2383/BP2003.
       0.621
fliM
Flagellar motor switch protein.
  
  
 0.570
BAV2533
Type 4 prepilin leader peptidase.
  
    0.555
BAV2526
Putative exported protein; Start codon not provided.
       0.553
BAV2527
Partial CDS. Similar to the Bordetellae putative lipoprotein BB1831/BPP2381/BP2001.
  
    0.524
glnL
Nitrogen regulation protein NR(II).
 
 
 0.518
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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