Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAV2525APutative exported protein (partial); Partial CDS. Similar to the N-terminal region of the Bordetellae putative exported protein BB1833/BPP2383/BP2003. (116 aa)    
Predicted Functional Partners:
BAV2527
Partial CDS. Similar to the Bordetellae putative lipoprotein BB1831/BPP2381/BP2001.
  
  
 0.812
BAV2526
Putative exported protein; Start codon not provided.
  
    0.768
BAV2525
Probable sigma-54 interacting transcription regulator (partial); Partial CDS. Similar to an internal region of the Bordetellae putative response regulators BB1834/BPP2384/BP2004.
       0.621
BAV2534
Putative pilin subunit.
  
  
 0.616
BAV2285
Putative pilus assembly protein.
  
  
 0.522
BAV2524
Putative exported protein.
       0.473
BAV2528
Putative type IV pilus assembly protein.
  
  
 0.441
BAV2283
Putative pilus assembly protein.
  
  
 0.428
BAV2286
Putative pilus assembly protein; Belongs to the bacterial secretin family.
  
  
 0.420
BAV2532
Putative type IV pilus assembly protein (partial); Belongs to the bacterial secretin family.
  
  
 0.420
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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