STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
BAV2533Type 4 prepilin leader peptidase. (168 aa)    
Predicted Functional Partners:
BAV2532
Putative type IV pilus assembly protein (partial); Belongs to the bacterial secretin family.
  
  
 0.944
BAV2531
Putative type IV pilus assembly protein (pseudogene); Unassigned protein domain.
  
  
 0.922
BAV2534
Putative pilin subunit.
  
  
 0.891
BAV2287
Putative pilus assembly protein.
  
  
 0.824
BAV2528
Putative type IV pilus assembly protein.
  
  
 0.691
BAV2286
Putative pilus assembly protein; Belongs to the bacterial secretin family.
  
  
 0.637
BAV2535
Putative signaling protein.
  
    0.599
BAV2284
Putative pilus assembly protein.
  
  
 0.565
BAV2525
Probable sigma-54 interacting transcription regulator (partial); Partial CDS. Similar to an internal region of the Bordetellae putative response regulators BB1834/BPP2384/BP2004.
  
    0.555
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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