STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2541ABC transporter, permease protein. (325 aa)    
Predicted Functional Partners:
BAV2540
ABC transporter, permease protein.
 
    0.978
BAV2542
ABC transporter, substrate-binding protein.
 
   0.977
BAV2539
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.944
appD
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.670
BAV2800
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.636
BAV2543
Nuclease.
       0.634
appF
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.617
BAV3205
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.603
BAV1561
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.562
BAV2801
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.562
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.