STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
BAV2554Putative beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family. (397 aa)    
Predicted Functional Partners:
phbB-2
acetoacetyl-CoA reductase; Start codon not provided; Similar to N-terminal half of Escherichia coli probable 3-hydroxybutyryl-coa dehydrogenase paaH SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): 5.4e-15, 30.79 38d in 328 aa.
 
 0.999
BAV0226
acyl-CoA dehydrogenase.
  
 0.949
BAV0610
acyl-CoA dehydrogenase.
  
 0.949
gcdH
glutaryl-CoA dehydrogenase.
  
 0.949
BAV3021
acyl-CoA dehydrogenase.
  
 0.949
catJ
3-oxoadipate CoA-transferase subunit.
  
 
 0.936
hmgcL
hydroxymethylglutaryl-CoA lyase.
  
 
 0.927
mmsA
Putative methylmalonate-semialdehyde dehydrogenase [acylating].
   
 0.925
BAV1141
Methylmalonate-semialdehyde dehydrogenase.
   
 0.925
mmsA-2
Methylmalonate-semialdehyde dehydrogenase [acylating].
   
 0.925
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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