Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAV1979 | BAV3245 | BAV1979 | BAV3245 | Putative peptidoglycan-binding peptidase. | Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase. | 0.586 |
| BAV1979 | mesJ | BAV1979 | BAV2559 | Putative peptidoglycan-binding peptidase. | tRNAIle-lysidine synthetase (putative cell cycle protein); Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. | 0.618 |
| BAV1979 | rhlE-2 | BAV1979 | BAV2760 | Putative peptidoglycan-binding peptidase. | Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.587 |
| BAV1979 | rhlE-3 | BAV1979 | BAV3343 | Putative peptidoglycan-binding peptidase. | Putative ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | 0.599 |
| BAV1979 | sucA | BAV1979 | BAV1203 | Putative peptidoglycan-binding peptidase. | 2-oxoglutarate dehydrogenase E1 component. | 0.591 |
| BAV1979 | tuf | BAV1979 | BAV0006 | Putative peptidoglycan-binding peptidase. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.650 |
| BAV3245 | BAV1979 | BAV3245 | BAV1979 | Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase. | Putative peptidoglycan-binding peptidase. | 0.586 |
| BAV3245 | mesJ | BAV3245 | BAV2559 | Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase. | tRNAIle-lysidine synthetase (putative cell cycle protein); Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. | 0.592 |
| BAV3245 | rhlE-2 | BAV3245 | BAV2760 | Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase. | Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.674 |
| BAV3245 | rhlE-3 | BAV3245 | BAV3343 | Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase. | Putative ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | 0.628 |
| BAV3245 | sucA | BAV3245 | BAV1203 | Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase. | 2-oxoglutarate dehydrogenase E1 component. | 0.601 |
| BAV3245 | tuf | BAV3245 | BAV0006 | Plasma membrane-type ATPase; Start codon not provided; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.583 |
| accA | alkA | BAV2560 | BAV2561 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | DNA-3-methyladenine glycosylase. | 0.680 |
| accA | ask | BAV2560 | BAV2558 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | Aspartokinase; Belongs to the aspartokinase family. | 0.603 |
| accA | cysS | BAV2560 | BAV2562 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.713 |
| accA | mesJ | BAV2560 | BAV2559 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | tRNAIle-lysidine synthetase (putative cell cycle protein); Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. | 0.848 |
| alkA | accA | BAV2561 | BAV2560 | DNA-3-methyladenine glycosylase. | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | 0.680 |
| alkA | ask | BAV2561 | BAV2558 | DNA-3-methyladenine glycosylase. | Aspartokinase; Belongs to the aspartokinase family. | 0.489 |
| alkA | cysS | BAV2561 | BAV2562 | DNA-3-methyladenine glycosylase. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.796 |
| alkA | mesJ | BAV2561 | BAV2559 | DNA-3-methyladenine glycosylase. | tRNAIle-lysidine synthetase (putative cell cycle protein); Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. | 0.651 |
page 1 of 4