STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV2585GntR-family transcriptional regulator; Start codon not provided. (239 aa)    
Predicted Functional Partners:
BAV2580
Putative ABC transporter, substrate binding protein.
 
     0.853
BAV2581
ABC transporter, permease protein.
 
     0.835
BAV2582
ABC transporter, ATP-binding protein.
 
     0.817
BAV2583
Hypothetical protein; No significant database matches.
       0.780
BAV2584
Putative amidase.
       0.780
BAV3099
GntR-family transcriptional regulator.
  
     0.765
BAV2611
GntR-family transcriptional regulator.
  
     0.734
BAV0247
GntR-family transcriptional regulator.
  
  
 0.687
srfA
Putative virulence factor (pseudogene).
 
     0.564
BAV1879
GntR-family transcriptional regulator.
  
  
 0.512
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.