BAV2595 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV2595

Putative membrane-associated peptidase. (226 aa)

Predicted Functional Partners:

BAV0699

0.723

BAV2596

0.651

dapA2

0.586

BAV2593

0.564

ruvC

0.486

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0699	BAV2595	BAV0699	BAV2595	Putative transporter.	Putative membrane-associated peptidase.	0.723
BAV2593	BAV2595	BAV2593	BAV2595	Putative lipoprotein.	Putative membrane-associated peptidase.	0.564
BAV2593	BAV2596	BAV2593	BAV2596	Putative lipoprotein.	Conserved hypothetical protein; Belongs to the SUA5 family.	0.534
BAV2593	dapA2	BAV2593	BAV2594	Putative lipoprotein.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.870
BAV2595	BAV0699	BAV2595	BAV0699	Putative membrane-associated peptidase.	Putative transporter.	0.723
BAV2595	BAV2593	BAV2595	BAV2593	Putative membrane-associated peptidase.	Putative lipoprotein.	0.564
BAV2595	BAV2596	BAV2595	BAV2596	Putative membrane-associated peptidase.	Conserved hypothetical protein; Belongs to the SUA5 family.	0.651
BAV2595	dapA2	BAV2595	BAV2594	Putative membrane-associated peptidase.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.586
BAV2595	ruvC	BAV2595	BAV2777	Putative membrane-associated peptidase.	Crossover junction endodeoxyribonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.486
BAV2596	BAV2593	BAV2596	BAV2593	Conserved hypothetical protein; Belongs to the SUA5 family.	Putative lipoprotein.	0.534
BAV2596	BAV2595	BAV2596	BAV2595	Conserved hypothetical protein; Belongs to the SUA5 family.	Putative membrane-associated peptidase.	0.651
BAV2596	dapA2	BAV2596	BAV2594	Conserved hypothetical protein; Belongs to the SUA5 family.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.562
dapA2	BAV2593	BAV2594	BAV2593	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Putative lipoprotein.	0.870
dapA2	BAV2595	BAV2594	BAV2595	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Putative membrane-associated peptidase.	0.586
dapA2	BAV2596	BAV2594	BAV2596	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Conserved hypothetical protein; Belongs to the SUA5 family.	0.562
ruvC	BAV2595	BAV2777	BAV2595	Crossover junction endodeoxyribonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	Putative membrane-associated peptidase.	0.486