BAV2615 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BAV2615

Putative poly(aspartic acid) hydrolase. (288 aa)

Predicted Functional Partners:

BAV2610

0.812

BAV2611

0.796

aat

0.790

BAV2614

0.723

BAV2613

0.704

BAV2612

0.665

BAV1028

0.638

BAV1824

0.625

BAV2433

0.618

BAV3207

0.618

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV1028	BAV2433	BAV1028	BAV2433	Extracellular solute-binding protein.	Conserved hypothetical protein; Start codon not provided.	0.464
BAV1028	BAV2613	BAV1028	BAV2613	Extracellular solute-binding protein.	ABC transporter, permease protein.	0.827
BAV1028	BAV2614	BAV1028	BAV2614	Extracellular solute-binding protein.	ABC transporter, permease protein.	0.822
BAV1028	BAV2615	BAV1028	BAV2615	Extracellular solute-binding protein.	Putative poly(aspartic acid) hydrolase.	0.638
BAV1028	aat	BAV1028	BAV1029	Extracellular solute-binding protein.	Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase precursor.	0.908
BAV1824	BAV2610	BAV1824	BAV2610	Putative transcriptional regulator.	ABC transporter, substrate-binding protein.	0.405
BAV1824	BAV2615	BAV1824	BAV2615	Putative transcriptional regulator.	Putative poly(aspartic acid) hydrolase.	0.625
BAV1824	aat	BAV1824	BAV1029	Putative transcriptional regulator.	Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase precursor.	0.495
BAV2433	BAV1028	BAV2433	BAV1028	Conserved hypothetical protein; Start codon not provided.	Extracellular solute-binding protein.	0.464
BAV2433	BAV2610	BAV2433	BAV2610	Conserved hypothetical protein; Start codon not provided.	ABC transporter, substrate-binding protein.	0.513
BAV2433	BAV2615	BAV2433	BAV2615	Conserved hypothetical protein; Start codon not provided.	Putative poly(aspartic acid) hydrolase.	0.618
BAV2433	BAV3207	BAV2433	BAV3207	Conserved hypothetical protein; Start codon not provided.	Putative poly(aspartic acid) Hydrolase.	0.479
BAV2433	aat	BAV2433	BAV1029	Conserved hypothetical protein; Start codon not provided.	Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase precursor.	0.549
BAV2610	BAV1824	BAV2610	BAV1824	ABC transporter, substrate-binding protein.	Putative transcriptional regulator.	0.405
BAV2610	BAV2433	BAV2610	BAV2433	ABC transporter, substrate-binding protein.	Conserved hypothetical protein; Start codon not provided.	0.513
BAV2610	BAV2611	BAV2610	BAV2611	ABC transporter, substrate-binding protein.	GntR-family transcriptional regulator.	0.597
BAV2610	BAV2612	BAV2610	BAV2612	ABC transporter, substrate-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.597
BAV2610	BAV2613	BAV2610	BAV2613	ABC transporter, substrate-binding protein.	ABC transporter, permease protein.	0.896
BAV2610	BAV2614	BAV2610	BAV2614	ABC transporter, substrate-binding protein.	ABC transporter, permease protein.	0.896
BAV2610	BAV2615	BAV2610	BAV2615	ABC transporter, substrate-binding protein.	Putative poly(aspartic acid) hydrolase.	0.812