STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2643Putative capsular polysaccharide biosynthesis protein. (345 aa)    
Predicted Functional Partners:
BAV2642
Putative capsular polysaccharide biosynthesis protein.
  
  
 0.784
BAV2641
Putative capsular polysaccharide biosynthesis oxidoreductase.
       0.773
BAV2640
Putative capsular polysaccharide biosynthesis protein.
  
    0.740
BAV2639
Putative capsular polysaccharide export protein; Start codon not provided.
  
  
 0.737
BAV2636
Capsular polysaccharide biosynthesis glucosyltransferase.
  
  
 0.686
xanB
Capsular polysaccharide biosynthesis protein [includes: mannose-6-phosphate isomerase and mannose-1-phosphate guanylyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.555
BAV2638
Putative capsular polysaccharide biosynthesis glucosyltransferase; Belongs to the glycosyltransferase 26 family.
  
  
 0.481
BAV3087
Putative O-antigen export ABC transporter,putative permease protein.
  
  
 0.447
BAV2637
Putative capsular polysaccharide biosynthesis protein; Start codon not provided; Weakly similar to the C-terminal region of enterics sucrose operon repressor ScrR SWALL:SCRR_SALTY (SWALL:P37077) (334 aa) fasta scores: E(): 3.1, 30.5 38d in 177 aa.
       0.426
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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