STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAV2645Putative capsular polysaccharide biosynthesis protein. (418 aa)    
Predicted Functional Partners:
BAV2649
Putative capsular polysaccharide biosynthesis protein; Start codon not provided.
 
  
 0.928
BAV2647
Putative capsular polysaccharide biosynthesis glycosyl transferase.
 
  
 0.906
BAV2651
Start codon not provided; Similar to N-terminus of many polysaccharide biosynthesis proteins.
 
  
 0.853
BAV2650
Putative capsular polysaccharide biosynthesis protein.
  
 0.840
BAV2636
Capsular polysaccharide biosynthesis glucosyltransferase.
  
  
 0.837
BAV2646
Putative capsular polysaccharide biosynthesis glycosyl transferase.
 
  
 0.836
BAV2648
Putative capsular polysaccharide biosynthesis protein; No significant database matches.
       0.777
rmlC
dTDP-6-deoxy-D-glucose-3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.773
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.773
rkpK
UDP-glucose 6-dehydrogenase.
  
  
 0.773
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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