STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV2649Putative capsular polysaccharide biosynthesis protein; Start codon not provided. (432 aa)    
Predicted Functional Partners:
BAV2647
Putative capsular polysaccharide biosynthesis glycosyl transferase.
 
  
 0.950
BAV2645
Putative capsular polysaccharide biosynthesis protein.
 
  
 0.928
BAV2651
Start codon not provided; Similar to N-terminus of many polysaccharide biosynthesis proteins.
 
  
 0.886
BAV2650
Putative capsular polysaccharide biosynthesis protein.
 
  
 0.857
BAV2646
Putative capsular polysaccharide biosynthesis glycosyl transferase.
 
   
 0.832
BAV2644
Putative capsular polysaccharide biosynthesis O-acetyl transferase; Start codon not provided.
 
   
 0.796
BAV2648
Putative capsular polysaccharide biosynthesis protein; No significant database matches.
       0.779
BAV2636
Capsular polysaccharide biosynthesis glucosyltransferase.
 
  
 0.762
xanB
Capsular polysaccharide biosynthesis protein [includes: mannose-6-phosphate isomerase and mannose-1-phosphate guanylyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.636
BAV2652
Putative capsular polysaccharide biosynthesis acyltransferase.
 
   
 0.555
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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