STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2653Putative capsular polysaccharide biosynthesis protein; No significant database matches. (122 aa)    
Predicted Functional Partners:
BAV2652
Putative capsular polysaccharide biosynthesis acyltransferase.
       0.773
xanB
Capsular polysaccharide biosynthesis protein [includes: mannose-6-phosphate isomerase and mannose-1-phosphate guanylyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
      
 0.583
BAV0081
Putative O-antigen translocase.
      
 0.420
BAV0089
Putative lipid A biosynthesis protein.
      
 0.420
BAV0265
Conserved hypothetical protein.
      
 0.420
BAV0283
Conserved hypothetical protein; Start codon not provided.
      
 0.420
gspF
General secretion pathway protein F.
      
 0.420
BAV2525A
Putative exported protein (partial); Partial CDS. Similar to the N-terminal region of the Bordetellae putative exported protein BB1833/BPP2383/BP2003.
      
 0.420
BAV2534
Putative pilin subunit.
      
 0.420
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.