STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2669Putative exported protein. (172 aa)    
Predicted Functional Partners:
BAV2759
Putative thioredoxin.
  
    0.744
BAV3290
Conserved hypothetical protein.
  
     0.744
bph1
Histone.
  
     0.726
BAV2520
Outer membrane porin protein.
  
   
 0.718
BAV2282
Putative membrane protein.
  
    0.707
BAV3116
Putative exported protein.
  
    0.703
BAV1186
Conserved hypothetical protein.
  
     0.690
BAV1752
Putative membrane protein.
  
     0.688
BAV0357
Outer membrane porin protein; Start codon not provided.
  
   
 0.682
lptE
Putative lipoprotein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
 
 
 0.680
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.