STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hbdHD-beta-hydroxybutyrate dehydrogenase. (260 aa)    
Predicted Functional Partners:
hmgcL
hydroxymethylglutaryl-CoA lyase.
   
 
 0.916
bdhA
Putative D-beta-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 
0.915
adc
Acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
  
  
  0.915
lpsJ
succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
  
 0.906
lpsI
succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
  
 
 0.901
BAV2675
Conserved hypothetical protein; Belongs to the UPF0246 family.
       0.746
BAV3082
Putative short-chain dehydrogenase/reductase.
  
     0.740
BAV2076
Putative short-chain dehydrogenase; Start codon not provided.
  
 
 
 0.457
phaZ
Poly-beta-hydroxybutyrate (PHB) depolymerase.
  
   
 0.425
wlbJK
Putative membrane protein.
    
 
 0.422
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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