STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adiA-2Biodegradative arginine decarboxylase. (792 aa)    
Predicted Functional Partners:
BAV0895
Putative agmatinase/arginase; Belongs to the arginase family.
    
 0.917
adiA
Biodegradative arginine decarboxylase.
  
  
 
0.911
argH
Argininosuccinate lyase.
     
 0.813
arcD2
Arginine/ornithine antiporter; Also similar to BAV2686 (55.511 38d).
  
  
 0.745
arcD1
Arginine/ornithine antiporter; Also similar to BAV2688 (55.511 38d).
  
  
 0.651
BAV2517
Conserved hypothetical protein.
  
     0.580
efp
Putative elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.559
BAV2711
Putative ATPase.
   
 
 0.436
BAV2689
Putative transposase (partial); Partial CDS. Similar to the C-terminal region of many transposases.
       0.434
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.