STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV27394,5-dihydroxyphthalate decarboxylase. (330 aa)    
Predicted Functional Partners:
phtD
4,5-dihydroxyphthalate decarboxylase.
  
  
 
0.903
BAV2735
Putative subunit of carbon monoxide dehydrogenase.
 
     0.859
BAV2740
Putative exported protein.
  
    0.825
cutM-2
Carbon monoxide dehydrogenase medium chain.
 
     0.801
cutS-2
Putative carbon monoxide dehydrogenase small subunit.
  
    0.794
cutL-2
Putative carbon monoxide dehydrogenase large subunit.
 
     0.791
BAV1951
Putative lipoprotein.
  
     0.619
BAV0656
Putative dioxygenase.
  
   
 0.603
BAV0644
ABC transporter, permease protein.
 
 
 0.551
BAV0740
ABC transporter, permease protein.
 
 
 0.550
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.