STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2771Putative Ca2+/Na+ antiporter. (345 aa)    
Predicted Functional Partners:
pepP
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
     
 0.665
kdsD
Arabinose 5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.646
ribB-2
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
 
   
 0.470
phaAB
K(+)/H(+) antiporter subunit A/B (pH adaptation potassium efflux system protein A/B).
     
 0.435
BAV1625
Putative thioredoxin.
 
     0.434
BAV0521
Hypothetical protein; No significant database matches.
      
 0.428
BAV0388
Hypothetical protein.
  
     0.413
btuB
TonB-dependent vitamin B12 receptor; Start codon not provided.
      
 0.410
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.