STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2785Putative cytochrome oxidase D ubiquinol oxidase,subunit II. (348 aa)    
Predicted Functional Partners:
BAV2786
Putative cytochrome bd ubiquinol oxidase,subunit I.
 
 0.999
cydB1
Cytochrome d ubiquinol oxidase subunit II; Also similar to BAV3110 (44.3 38d.).
  
  
  0.963
cydA1
Cytochrome D ubiquinol oxidase subunit I; Start codon not provided; Also similar to BAV3111 (54.6 38d.).
 
 
 0.928
cydB2
Cytochrome D ubiquinol oxidase subunit II; Also similar to BAV0992 (44.3 38d 0d.).
  
  
 
0.925
cydA2
Cytochrome D ubiquinol oxidase subunit I; Also similar to BAV0991 (54.6 38d.).
 
 
 0.917
cydD
ABC transporter, ATP-binding protein; Start codon not provided.
 
  
 0.783
cydC
ABC transporter, ATP-binding protein.
 
  
 0.718
glnS
glutaminyl-tRNA synthetase.
       0.616
nuoG
NADH dehydrogenase I chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
    
 0.563
BAV3109
Putative exported protein.
  
 
 0.560
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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