Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BAV0087 | glmS | BAV0087 | BAV3270 | Putative lipopolysaccharide biosynthesis protein. | Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.917 |
BAV0087 | glnA | BAV0087 | BAV1931 | Putative lipopolysaccharide biosynthesis protein. | Glutamine synthetase. | 0.911 |
BAV0087 | glsA | BAV0087 | BAV2794 | Putative lipopolysaccharide biosynthesis protein. | Glutaminase; Belongs to the glutaminase family. | 0.901 |
BAV0087 | gltB | BAV0087 | BAV3291 | Putative lipopolysaccharide biosynthesis protein. | Glutamate synthase [NADPH] large chain precursor. | 0.901 |
BAV0087 | gltD | BAV0087 | BAV3292 | Putative lipopolysaccharide biosynthesis protein. | Glutamate synthase [NADPH] small chain. | 0.902 |
gadA2 | gdhA | BAV2797 | BAV1836 | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.912 |
gadA2 | gdhA-2 | BAV2797 | BAV3182 | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.912 |
gadA2 | glnA | BAV2797 | BAV1931 | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | Glutamine synthetase. | 0.918 |
gadA2 | glsA | BAV2797 | BAV2794 | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | Glutaminase; Belongs to the glutaminase family. | 0.957 |
gadA2 | gltB | BAV2797 | BAV3291 | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | Glutamate synthase [NADPH] large chain precursor. | 0.949 |
gadA2 | gltD | BAV2797 | BAV3292 | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | Glutamate synthase [NADPH] small chain. | 0.900 |
gadA2 | putA | BAV2797 | BAV2084 | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.908 |
gdhA | gadA2 | BAV1836 | BAV2797 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | 0.912 |
gdhA | gdhA-2 | BAV1836 | BAV3182 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.920 |
gdhA | glnA | BAV1836 | BAV1931 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase. | 0.917 |
gdhA | glsA | BAV1836 | BAV2794 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutaminase; Belongs to the glutaminase family. | 0.909 |
gdhA | gltB | BAV1836 | BAV3291 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate synthase [NADPH] large chain precursor. | 0.999 |
gdhA | gltD | BAV1836 | BAV3292 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate synthase [NADPH] small chain. | 0.934 |
gdhA | putA | BAV1836 | BAV2084 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.957 |
gdhA-2 | gadA2 | BAV3182 | BAV2797 | NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate decarboxylase alpha/beta; Also similar to BAV2621 (80.679 38d); Belongs to the group II decarboxylase family. | 0.912 |
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