BAV2803 protein (Bordetella avium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAV2803

ABC transporter, permease protein. (329 aa)

Predicted Functional Partners:

BAV2802

0.969

BAV2801

0.960

BAV2800

0.946

BAV2804

0.931

BAV3339

0.871

BAV1562

0.868

BAV3204

0.865

BAV3337

0.841

appC

0.839

BAV0499

0.831

Your Current Organism:

Bordetella avium

NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAV0499	BAV2800	BAV0499	BAV2800	Putative ABC transporter permease protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.857
BAV0499	BAV2801	BAV0499	BAV2801	Putative ABC transporter permease protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.804
BAV0499	BAV2803	BAV0499	BAV2803	Putative ABC transporter permease protein.	ABC transporter, permease protein.	0.831
BAV0499	BAV2804	BAV0499	BAV2804	Putative ABC transporter permease protein.	ABC transporter, substrate-binding protein.	0.422
BAV1562	BAV2800	BAV1562	BAV2800	ABC transporter, permease protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.886
BAV1562	BAV2801	BAV1562	BAV2801	ABC transporter, permease protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.924
BAV1562	BAV2803	BAV1562	BAV2803	ABC transporter, permease protein.	ABC transporter, permease protein.	0.868
BAV1562	BAV2804	BAV1562	BAV2804	ABC transporter, permease protein.	ABC transporter, substrate-binding protein.	0.752
BAV1562	BAV3337	BAV1562	BAV3337	ABC transporter, permease protein.	ABC transporter, substrate-binding protein.	0.752
BAV2800	BAV0499	BAV2800	BAV0499	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative ABC transporter permease protein.	0.857
BAV2800	BAV1562	BAV2800	BAV1562	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.886
BAV2800	BAV2801	BAV2800	BAV2801	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.800
BAV2800	BAV2802	BAV2800	BAV2802	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease protein.	0.962
BAV2800	BAV2803	BAV2800	BAV2803	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.946
BAV2800	BAV2804	BAV2800	BAV2804	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, substrate-binding protein.	0.746
BAV2800	BAV3204	BAV2800	BAV3204	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.890
BAV2800	BAV3337	BAV2800	BAV3337	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, substrate-binding protein.	0.419
BAV2800	BAV3339	BAV2800	BAV3339	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.831
BAV2800	appC	BAV2800	BAV0999	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative oligopeptide ABC transporter, permease protein.	0.842
BAV2801	BAV0499	BAV2801	BAV0499	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative ABC transporter permease protein.	0.804