STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAV2804ABC transporter, substrate-binding protein. (523 aa)    
Predicted Functional Partners:
BAV2803
ABC transporter, permease protein.
 
   0.931
BAV2802
ABC transporter permease protein.
 
   0.930
BAV3338
ABC transporter, permease protein.
 
   0.844
BAV3339
ABC transporter, permease protein.
 
   0.841
BAV2801
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   0.825
BAV1563
ABC transporter, permease protein.
 
   0.798
BAV3204
ABC transporter, permease protein.
 
   0.757
BAV1562
ABC transporter, permease protein.
 
   0.752
BAV2800
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   0.746
BAV3203
ABC transporter, permease protein; Start codon not provided.
 
   0.734
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.