STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysD2O-acetylhomoserine sulfhydrylase; Almost identical to BAV0639 (98.8 38d). (429 aa)    
Predicted Functional Partners:
metX
Homoserine-ortho-acyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.
 
 
 0.963
metH
Methionine synthase (5-methyltetrahydrofolate--homocysteine methyltransferase); Start codon not provided.
  
 
 0.952
metC
Cystathionine beta-lyase; Previously sequenced as Bordetella avium cystathionine beta-lyase metC SWALL:METC_BORAV (SWALL:Q07703) (395 aa).
 
 
0.939
BAV2122
Cys/Met metabolism PLP-dependent enzyme.
  
  
 
0.917
metE
Putative 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase.
  
 
 0.911
metE-2
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
  
 
 0.911
acyH
Adenosylhomocysteinase; Start codon not provided.
     
 0.909
cysD1
O-acetylhomoserine sulfhydrylase; Almost identical to BAV2830 (98.8 38d).
  
  
 
0.900
hom
Homoserine dehydrogenase.
  
 
 0.841
tdcB-2
Threonine dehydratase catabolic.
   
 
  0.806
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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