STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2839Putative alginate lyase. (333 aa)    
Predicted Functional Partners:
wssI
Glutamate decarboxylase alpha/beta; Also similar to BAV2797 (80.679id 38d).
 
  
 0.654
BAV3373
Conserved hypothetical protein.
  
     0.561
wlbJK
Putative membrane protein.
  
  
 0.556
BAV2838
Putative membrane protein.
       0.535
BAV2840
Putative lipoprotein.
  
    0.526
BAV3405
Putative dehydrogenase, molybdenum binding subunit; Start codon not provided.
  
     0.494
BAV0967
Putative membrane protein.
  
     0.488
BAV1831
Conserved hypothetical protein.
  
     0.465
BAV0356
Putative molybdenum-containing aldehyde oxido-reductase; Start codon not provided.
  
     0.454
BAV2641
Putative capsular polysaccharide biosynthesis oxidoreductase.
  
     0.448
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.