STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metID-methionine ABC transporter, permease protein. (199 aa)    
Predicted Functional Partners:
metN
D-methionine ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.999
metQ
D-methionine ABC transporter, substrate-binding protein; Also similar to BAV3166 (55.8 38d.); Belongs to the nlpA lipoprotein family.
 0.998
BAV3166
Putative exported protein; Also similar to BAV2852 (55.8 38d.).
 0.997
BAV1884
Putative exported protein.
 0.995
BAV0970
Putative desulfurization enzyme.
 
    0.562
metF
5,10-methylenetetrahydrofolate reductase; Deleted EC_number 1.7.99.5; Belongs to the methylenetetrahydrofolate reductase family.
   
    0.517
BAV2855
Putative glycoside hydrolase; Start codon not provided; Belongs to the glycosyl hydrolase 31 family.
       0.442
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.