STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metND-methionine ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (362 aa)    
Predicted Functional Partners:
metI
D-methionine ABC transporter, permease protein.
 
 0.999
metQ
D-methionine ABC transporter, substrate-binding protein; Also similar to BAV3166 (55.8 38d.); Belongs to the nlpA lipoprotein family.
 
 0.997
BAV1884
Putative exported protein.
 
 0.993
BAV3166
Putative exported protein; Also similar to BAV2852 (55.8 38d.).
 
 0.993
metF
5,10-methylenetetrahydrofolate reductase; Deleted EC_number 1.7.99.5; Belongs to the methylenetetrahydrofolate reductase family.
   
  
 0.658
metK
S-adenosylmethionine synthetase; Start codon not provided; Belongs to the AdoMet synthase family.
  
  
 0.613
metC
Cystathionine beta-lyase; Previously sequenced as Bordetella avium cystathionine beta-lyase metC SWALL:METC_BORAV (SWALL:Q07703) (395 aa).
  
  
 0.599
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
      
 0.493
BAV2855
Putative glycoside hydrolase; Start codon not provided; Belongs to the glycosyl hydrolase 31 family.
       0.460
bvgS
Virulence sensor protein; Start codon not provided.
  
  
 0.443
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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