STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAV2898Putative exported protein. (247 aa)    
Predicted Functional Partners:
BAV1752
Putative membrane protein.
  
    0.617
BAV1056
Putative membrane protein.
  
     0.569
BAV2669
Putative exported protein.
  
     0.502
BAV0159
Conserved hypothetical protein.
  
     0.500
BAV1625
Putative thioredoxin.
  
     0.497
phaP
Granule-associated protein (phasin).
  
     0.470
BAV0068
Putative C-type cytochrome bigenesis protein.
  
     0.450
BAV2899
Conserved hypothetical protein.
       0.426
BAV1116
Conserved hypothetical protein.
  
     0.406
BAV2900
Hypothetical protein; Start codon not provided; No significant database matches. Seems to be unique to the bordetellae.
       0.402
Your Current Organism:
Bordetella avium
NCBI taxonomy Id: 360910
Other names: B. avium 197N, Bordetella avium 197N, Bordetella avium str. 197N, Bordetella avium strain 197N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.